Biology

A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems
A ‘Hitchhiker’s Guide’ introducing deep learning for molecular modelling—written without the goal of publication—if we could travel back in time and learn from it at the start of our PhDs! 🤗
Alexandre Duval, Simon V. Mathis, Chaitanya K. Joshi, Victor Schmidt, Santiago Miret, Fragkiskos D. Malliaros, Taco Cohen, Pietro Liò, Yoshua Bengio, Michael Bronstein
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A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems
Hypergraph Factorisation for Multi-tissue Gene Expression Imputation
HYFA (Hypergraph Factorisation) jointly imputates multi-tissue and cell-type gene expression via a specialised graph neural network operating on a hypergraph of individuals, metagenes, and tissues. (Nature Machine Intelligence, cover article)
Ramon Viñas, Chaitanya K. Joshi, Dobrik Georgiev, Phillip Lin, Bianca Dumitrascu, Eric R. Gamazon, Pietro Liò
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Hypergraph Factorisation for Multi-tissue Gene Expression Imputation