RNA

Getting started with 3D RNA modelling as a machine learner
A currated reading + watch list for beginners to get started with RNA modelling and desing.
Chaitanya K. Joshi
May 1, 2024 6 min read
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Getting started with 3D RNA modelling as a machine learner
gRNAde: Geometric Deep Learning for 3D RNA Inverse Design
gRNAde is a geometric deep learning pipeline for 3D RNA inverse design, analogous to ProteinMPNN. gRNAde outperforms physically-based Rosetta and is significantly faster. (Invited book chapter for Methods in Molecular Biology)
Chaitanya K. Joshi, Arian R. Jamasb, Ramon Viñas, Charles Harris, Simon Mathis, Pietro Liò
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gRNAde: Geometric Deep Learning for 3D RNA Inverse Design
Multi-State RNA Design with Geometric Multi-Graph Neural Networks
We propose gRNAde, a geometric deep learning pipeline for 3D RNA inverse design from one or more backbone structures. (Invited book chapter for Methods in Molecular Biology)
Chaitanya K. Joshi, Arian R. Jamasb, Ramon Viñas, Charles Harris, Simon Mathis, Pietro Liò
PDF Cite Code Slides Video
Multi-State RNA Design with Geometric Multi-Graph Neural Networks